Welcome to the openMINDS documentation!
openMINDS is a metadata framework for Linked Data. The framework comprises:
Schema specifications for multiple, interlocked metadata models
Instance libraries for serviceable, well-defined terms and constructs
Supportive tooling for handling openMINDS in Python or MATLAB
Applying the openMINDS framework to your own data collection requires designing a Linked Data representation of your data (i.e., a graph of interconnected metadata objects/instances). What this means and how to approach it is described in Getting started.
Note
This project is under active development. As an open-source project, community contributions are highly appreciated (cf. Contribution guidelines).
How to cite and external records
Open Metadata Initiative (2020) openMINDS metadata framework (RRID:SCR_023173)openMINDS (RRID:SCR_023173)Funding and acknowledgements
The framework currently receives funding from the European Union’s Research and Innovation Program Horizon Europe under Grant Agreement No. 101147319 (EBRAINS 2.0 project).
The openMINDS metadata framework development started in the Human Brain Project (HBP), funded from the European Union’s Horizon 2020 Framework Programme for Research and Innovation under Specific Grant Agreement (SGA) No. 720270, No. 785907, and No. 945539.
The framework also received support from the Helmholtz International BigBrain Analytics and Learning Laboratory (HIBALL).
Collaboration partners
openMINDS is closely collaborating with the InterLex Project of the SciCrunch Data and Resource Infrastructure and the KnowledgeSpace hosted by the International Neuroinformatics Coordinating Facility (INCF).
- Getting started
- Working with openMINDS
- Supportive tooling
- Schema specifications
- ControlledTerms
- AgeCategory
- AnatomicalAxesOrientation
- BiologicalSex
- CellType
- ContributionType
- CriteriaQualityType
- DatasetType
- Disease
- DiseaseModel
- EthicsAssessment
- FileBundleGrouping
- FileUsageRole
- Genotype
- Language
- Laterality
- MetaDataModelType
- Modality
- ModelAbstractionLevel
- ModelScope
- OperatingDevice
- OperatingSystem
- Organ
- Phenotype
- PreparationType
- ProductAccessibility
- ProgrammingLanguage
- QualitativeOverlap
- SoftwareApplicationCategory
- SoftwareFeature
- SoftwareFeatureCategory
- Species
- Strain
- Technique
- Terminology
- TermSuggestion
- TissueSampleType
- UnitOfMeasurement
- Core
- Actors
- Data
- Miscellaneous
- Products
- Dataset
- DatasetVersion
- Properties
- accessibility
- author
- behavioralTask
- copyright
- custodian
- description
- digitalIdentifier
- ethicsAssessment
- experimentalApproach
- fullDocumentation
- fullName
- funding
- homepage
- howToCite
- inputData
- isAlternativeVersionOf
- isNewVersionOf
- keyword
- license
- otherContribution
- relatedPublication
- releaseDate
- repository
- shortName
- studiedSpecimen
- supportChannel
- technique
- type
- versionIdentifier
- versionInnovation
- Properties
- MetaDataModel
- MetaDataModelVersion
- Properties
- accessibility
- copyright
- custodian
- description
- developer
- digitalIdentifier
- fullDocumentation
- fullName
- funding
- homepage
- howToCite
- isAlternativeVersionOf
- isNewVersionOf
- keyword
- license
- otherContribution
- relatedPublication
- releaseDate
- repository
- serializationFormat
- shortName
- specificationFormat
- supportChannel
- type
- versionIdentifier
- versionInnovation
- Properties
- Model
- ModelVersion
- Properties
- accessibility
- copyright
- custodian
- description
- developer
- digitalIdentifier
- format
- fullDocumentation
- fullName
- funding
- homepage
- howToCite
- inputData
- isAlternativeVersionOf
- isNewVersionOf
- keyword
- license
- otherContribution
- outputData
- relatedPublication
- releaseDate
- repository
- shortName
- supportChannel
- versionIdentifier
- versionInnovation
- Properties
- Project
- Software
- SoftwareVersion
- Properties
- accessibility
- applicationCategory
- copyright
- custodian
- description
- developer
- device
- digitalIdentifier
- feature
- fullDocumentation
- fullName
- funding
- hasComponent
- homepage
- howToCite
- inputFormat
- isAlternativeVersionOf
- isNewVersionOf
- keyword
- language
- license
- operatingSystem
- otherContribution
- outputFormat
- programmingLanguage
- relatedPublication
- releaseDate
- repository
- requirement
- shortName
- supportChannel
- versionIdentifier
- versionInnovation
- Properties
- Research
- SANDS
- ControlledTerms
- Contribution guidelines
- Glossary